PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00621.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 280aa    MW: 30921.1 Da    PI: 8.4724
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00621.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB116.81.1e-3694185293
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       re  +++P +n++rim+ vlPa+  i++dake +q cvsefi fvt+ea+++c+r+ rkt++++d+l a+++lGf dy+epl ++l+k+r  
  Migut.E00621.1.p  94 REAVQYMPTTNITRIMRCVLPAHVNIADDAKEAIQVCVSEFINFVTAEANNRCRRDYRKTVTPEDVLAAMTSLGFGDYIEPLIIFLNKHRAQ 185
                       67789************************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-3888192IPR009072Histone-fold
SuperFamilySSF471131.27E-2999195IPR009072Histone-fold
PfamPF008085.0E-1999163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.3E-11127145No hitNo description
PRINTSPR006158.3E-11146164No hitNo description
PRINTSPR006158.3E-11165183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEKKIFYSKS KKVRNQIRRR MPFSGRTQRL CSSPFSEVIR SESVKVPFTQ TCIVIREGGA  60
PTPTAATNAV DIPAAPINET LGEVNREQQQ GVKREAVQYM PTTNITRIMR CVLPAHVNIA  120
DDAKEAIQVC VSEFINFVTA EANNRCRRDY RKTVTPEDVL AAMTSLGFGD YIEPLIIFLN  180
KHRAQQDLES GSMNQLGLFV RRDDDNGGFV HHQQPQDAHM VRSPPPPAAP TMGYYVPLPP  240
PAAGTVEDGE KLGGSTTVNN AYMSCNYGCG EGSSRWTRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-2794183392NF-YB
4csr_A2e-2794183493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B2e-2794183493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846005.11e-158PREDICTED: nuclear transcription factor Y subunit B-8-like
TrEMBLA0A022Q9U91e-171A0A022Q9U9_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6044436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.12e-37NF-YB family protein